Skip to content
Back to search
30
MCP

BioPortal

pulsemcp/bioportal

Integrates with BioPortal's API to search, annotate, and explore over 1,200 biological ontologies including medical terminologies like NCIT, DOID, and MESH with batch processing, text annotation, and analytics capabilities for bioinformatics research and clinical text processing.

Uptime
0.0%
3 probes
Response
0ms
last probe
Tools
0
callable
Primary URL

Similar MCP servers embedding-nearest

GTEx Portal
Integrates with GTEx Portal API to provide gene expression analysis, genetic variant associations, and tissue-specific genomics data retriev
0 tools
BioContext Knowledgebase
Provides unified access to over 20 biomedical databases and research tools including protein databases (UniProt, AlphaFold), genomics resour
0 tools
@pipeworx/mcp-ebi-ols
EBI Ontology Lookup Service — 250+ biomedical ontologies
0 tools
Gene Ontology
Integrates with Gene Ontology databases through QuickGO and official GO APIs to search terms, retrieve definitions and relationships, valida
0 tools
Bio-Data Parser
Bioinformatics and genomic sequence parser for clinical research.
0 tools · sse
Ebi Ols
EBI Ontology Lookup Service — 250+ biomedical ontologies
0 tools · streamable-http

How to use

Add to your Claude Desktop / Cursor / Cline MCP config:

{
  "mcpServers": {
    "bioportal": {
      "url": "None",
      "transport": "http"
    }
  }
}