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MCP v1.0.0 MCP 2025-11-25 streamable-http

Claidex MCP

com.claidex/failure-intelligence

Biomedical failure intelligence platform for terminated trials and translational analysis.

Uptime
50.0%
2 direct probes · 30d
Response
78ms
last probe
Tools
24
callable
Resources
5
readable
Prompts
5
available
Primary URL
https://app.claidex.com/api/mcp

Tools · 24

claidex_capabilities

Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts.

claidex_claim_risk_matrix

Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence.

claidex_health_snapshot

Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries.

claidex_research_prompt

Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use.

claidex_tool_catalog

Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools.

consult_specialist_model

Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems, second opinions, code generation/review, o…

fetch

Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows.

fetch_research_url

Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and truncates large responses.

get_claim_content

Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis, failure mechanism, and prevention analys…

query_chembl

Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms.

query_clinicaltrials

Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints, and why_stopped if terminated.

query_failure_graph

Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related claim slugs.

query_openfda

Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count.

query_opentargets

Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety liabilities for a gene-disease pair.

query_package_registry

Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling.

rank_documents_by_embedding

Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and lightweight RAG over user-provided passages.

rerank_documents

Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters.

run_computation

Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and reproducible calculations. Does not exec…

run_statistical_analysis

Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations, Bayesian posterior estimates, descriptive stati…

search

Search Claidex failure claims and preprint flags. This compatibility tool returns citation-ready results for OpenAI and ChatGPT remote MCP flows.

search_claims

Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with title, slug, drug, target, disease, phase, …

search_preprint_flags

Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or preprint title.

search_pubmed

Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result.

web_search

Search the web for recent news, investor commentary, analyst notes, press releases, and conference coverage about drugs, clinical trials, or biomedical mechanisms.

Resources · 5

capabilities

Feature, safety, storage, model, resource, prompt, and tool inventory.

claidex://capabilities
metrics

Database, graph, coverage, automation, MRS, and preprint-watch metrics.

claidex://metrics
tools

Complete MCP tool catalog with schemas.

claidex://tools
prompts

Reusable investigation prompts exposed by this server.

claidex://prompts
security

Authentication, validation, network, and sensitive-data handling notes.

claidex://security

Prompts · 5

failure-postmortem

Investigate a failed biomedical program with Claidex claims, graph context, and citations.

target-risk-dossier

Build a target-level risk dossier using MRS, graph edges, Open Targets, and failure archetypes.

preprint-signal-audit

Audit a preprint or early signal for contradiction risk, reproducibility gaps, and trial relevance.

phase-transition-analysis

Run statistical checks for phase transition, base-rate, and failure-rate claims.

package-risk-scan

Assess an npm or PyPI package before adding it to a biomedical data pipeline.

How to use

Add to your Claude Desktop / Cursor / Cline MCP config:

{
  "mcpServers": {
    "claidex_mcp": {
      "url": "https://app.claidex.com/api/mcp",
      "transport": "streamable-http"
    }
  }
}