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100
MCP live MCP 2025-11-25 streamable-http

BioCosm

io.github.nhoverte/biocosm

Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.

Uptime
100.0%
1 direct probes · 30d
Response
736ms
last probe
Tools
13
callable
Resources
0
readable
Prompts
0
available
Primary URL
https://biocosm-mcp.fly.dev/mcp

Tools · 13

search_nodes

Search BioCosm nodes by name, gene symbol, target, therapeutic area, or company. Results are ranked: exact name/brand matches first, then partial name matches, with a node-type prior (canonical drug/…

get_node

Get full details for a single BioCosm node: identity and all name aliases, classification, gene targets and mechanism, therapeutic areas, companies, revenue history where available (sparse: ~100 drugs…

get_writeup

Get the full writeup for a BioCosm node, including all sections, citations, structured data, and validation score.

list_by_therapeutic_area

List all nodes in a given therapeutic area.

get_company_portfolio

Get a company's full drug/diagnostic portfolio from BioCosm.

get_stats

Get a high-level overview of the BioCosm database: total nodes, writeups, companies, breakdowns by type/status/domain, validation scores, and recent pipeline runs.

get_staleness_report

Get writeup staleness report: overall stats, top stale nodes, data source freshness.

get_node_freshness

Get freshness details for a single node: writeup age, enrichment hash match, staleness score, validation score.

find_by_target

Find all drugs that target a specific gene/protein.

find_by_phase

List drugs/diagnostics at a specific clinical phase.

find_related

Find nodes connected to a given node. Three relationship types are derived on-the-fly: - "drug_target": for a drug, the targets it hits (and vice versa for a target node, the drug…

get_pos_score

Get the Probability of Success estimate for a node, including the base rate, adjustment factors with reasoning, confidence interval, and model version. Returns None for nodes without a PoS score (typ…

get_coverage

Report BioCosm's actual data coverage so you never mistake missing data for a real-world zero. An empty or absent field on a node means "not in BioCosm's data," never a true zero. BioCosm is AI-genera…

How to use

Add to your Claude Desktop / Cursor / Cline MCP config:

{
  "mcpServers": {
    "biocosm": {
      "url": "https://biocosm-mcp.fly.dev/mcp",
      "transport": "streamable-http"
    }
  }
}