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MCP live MCP 2025-03-26 streamable-http

com.tomesphere/tomesphere

com.tomesphere/tomesphere

Search 8.5M scientific papers with LLM TLDRs, citations, linked entities, figures, and full text.

Uptime
100.0%
1 direct probes · 30d
Response
767ms
last probe
Tools
9
callable
Resources
0
readable
Prompts
0
available
Primary URL
https://mcp.tomesphere.com/api/mcp

Tools · 9

search_papers

Search 8.5 million academic papers (arXiv + biomedical: PMC / bioRxiv / medRxiv, all disciplines) by topic, keyword, author, or linked entity (gene / protein / disease). Each hit returns id, title, TL…

get_paper

Fetch a paper's full metadata: title, authors, year, abstract, TLDR (LLM-generated), key findings, citation count, GitHub repos, HuggingFace models/datasets, videos, peer reviews, and links. Accepts a…

similar_papers

Find papers semantically similar to a given paper using SPECTER2 embeddings (trained on scientific-citation triplets). Returns nearest neighbors with TLDR. Use when the user wants 'papers like X' or '…

citations

Get papers that cite the given paper (who refers to this work). Use when the user asks 'who cites X', 'what's the impact', or wants follow-up work. Note: 2024+ citation coverage is sparse; indexing in…

references

Get the papers that this paper cites (its bibliography). Use when the user asks 'what does X cite' or 'show me the references'.

get_full_text

Fetch a paper's full body text as Markdown (methods, results, protocols, inline tables) — use for deep questions the abstract can't answer. Accepts an arXiv ID (2401.12345), a PMC ID (PMC5339222), or …

get_figures

Get a paper's real figure images — URLs, labels, and captions. Most biomedical papers have figures; arXiv papers often don't. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.

get_entities

Get the biomedical entities linked to a paper: genes, proteins, chemicals, diseases, species, mutations, cell lines, and clinical-trial (NCT) IDs. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.

get_structure

Resolve a gene/protein name (e.g. 'TP53', 'CD44') or UniProt accession to its 3D structure — returns the UniProt accession + AlphaFold model URL (and PDB when available). Great for a gene named in a p…

How to use

Add to your Claude Desktop / Cursor / Cline MCP config:

{
  "mcpServers": {
    "com.tomesphere/tomesphere": {
      "url": "https://mcp.tomesphere.com/api/mcp",
      "transport": "streamable-http"
    }
  }
}